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GSM2333593

  Basic Information
Experiment GSM2333593 Study GSE87544
Organism Mus musculus (mm10) Tissue Hypothalamus
Protocol Drop-seq Sample# 1
Sample Run SRR4340043
Reference Chen, R., et al. (2017). Single-Cell RNA-Seq Reveals Hypothalamic Cell Diversity. Cell Reports 18(13): 3227-3241.
Gene# 16329 Cell# 1280
PolyA site# Gene with polyA site#
APA event# Gene with APA event#
Cell types 8

  PolyA Site Expression
scAPAtrap
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Box plot showing poly(A) site expression in different cell types
11.522.533.5OligodendrocytePericyteNeuronNeural stem cellQuiescent neural stem cellEndothelial cellMicroglial cellVascular cell
OligodendrocytePericyteNeuronNeural stem cellQuiescent neural stem cellEndothelial cellMicroglial cellVascular cellPoly(A) site expression
UMAP showing 2D embeddings of celltypes based on the gene expression profile
−10−5051015−15−10−50510
OligodendrocytePericyteNeuronNeural stem cellQuiescent neural stem cellEndothelial cellMicroglial cellVascular cellUMAP_1UMAP_2
UMAP showing distribution poly(A) site expression in single cells
−10−5051015−15−10−50510
1.522.533.5Poly(A) site expressionUMAP_1UMAP_2
Scatter plot showing correlation between gene expression and poly(A) site expression
1.522.533.511.522.533.5
Gene expressionPoly(A) site expression

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