# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2305 from ./fasta/posSeq.fa (Fri Jun 25 23:25:58 CST 2021) # negatives: 2305 from shuffled positives # host: ubuntu-Super-Server # when: Fri Jun 25 23:33:54 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.317 C 0.138 G 0.155 U 0.390 MOTIF YAUAUA DREME-1 # Word Pos Neg P-value E-value # BEST YAUAUA 275 120 1.2e-016 4.8e-013 # UAUAUA 210 85 1.9e-014 7.5e-011 # CAUAUA 86 40 2.0e-005 8.1e-002 letter-probability matrix: alength= 4 w= 6 nsites= 307 E= 4.8e-013 0.000000 0.286645 0.000000 0.713355 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AABAAA DREME-2 # Word Pos Neg P-value E-value # BEST AABAAA 552 366 3.9e-012 1.6e-008 # AAUAAA 293 185 1.1e-007 4.2e-004 # AAGAAA 189 120 2.9e-005 1.2e-001 # AACAAA 141 104 9.0e-003 3.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 622 E= 1.6e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.217042 0.299035 0.483923 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CUUUKG DREME-3 # Word Pos Neg P-value E-value # BEST CUUUKG 216 100 6.3e-012 2.5e-008 # CUUUUG 168 73 1.5e-010 6.0e-007 # CUUUGG 51 27 4.1e-003 1.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 221 E= 2.5e-008 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.230769 0.769231 0.000000 0.000000 1.000000 0.000000 MOTIF WUGUAW DREME-4 # Word Pos Neg P-value E-value # BEST WUGUAW 556 398 5.4e-009 2.1e-005 # UUGUAU 169 113 3.5e-004 1.4e+000 # AUGUAA 136 89 8.1e-004 3.2e+000 # UUGUAA 184 139 5.5e-003 2.2e+001 # AUGUAU 126 89 5.9e-003 2.3e+001 letter-probability matrix: alength= 4 w= 6 nsites= 633 E= 2.1e-005 0.417062 0.000000 0.000000 0.582938 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.516588 0.000000 0.000000 0.483412 MOTIF CUYUGU DREME-5 # Word Pos Neg P-value E-value # BEST CUYUGU 179 96 1.4e-007 5.5e-004 # CUUUGU 124 66 1.1e-005 4.1e-002 # CUCUGU 58 31 2.6e-003 1.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 188 E= 5.5e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.313830 0.000000 0.686170 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF UUUGGU DREME-6 # Word Pos Neg P-value E-value # BEST UUUGGU 149 75 2.3e-007 9.0e-004 # UUUGGU 149 75 2.3e-007 9.0e-004 letter-probability matrix: alength= 4 w= 6 nsites= 155 E= 9.0e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GUUUCW DREME-7 # Word Pos Neg P-value E-value # BEST GUUUCW 217 135 3.2e-006 1.3e-002 # GUUUCU 125 77 3.4e-004 1.3e+000 # GUUUCA 94 60 3.3e-003 1.3e+001 letter-probability matrix: alength= 4 w= 6 nsites= 224 E= 1.3e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.424107 0.000000 0.000000 0.575893 # Stopping reason: E-value threshold exceeded # Running time: 9.18 seconds