# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2406 from ./fasta/posSeq.fa (Fri Jun 25 23:25:57 CST 2021)
#   negatives: 2406 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Fri Jun 25 23:33:25 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.318 C 0.139 G 0.155 U 0.388


MOTIF WAUAWA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      WAUAWA        754        461   1.2e-022   4.7e-019
#           UAUAUA        221         81   2.1e-017   8.4e-014
#           AAUAAA        326        203   8.3e-009   3.3e-005
#           UAUAAA        185        126   3.3e-004   1.3e+000
#           AAUAUA        165        111   4.9e-004   2.0e+000

letter-probability matrix: alength= 4 w= 6 nsites= 864 E= 4.7e-019
0.574074 0.000000 0.000000 0.425926
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.561343 0.000000 0.000000 0.438657
1.000000 0.000000 0.000000 0.000000


MOTIF UUUGGB DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUGGB        288        168   2.0e-009   7.8e-006
#           UUUGGU        188        109   1.3e-006   5.2e-003
#           UUUGGG         58         33   5.3e-003   2.1e+001
#           UUUGGC         49         27   7.3e-003   2.9e+001

letter-probability matrix: alength= 4 w= 6 nsites= 304 E= 7.8e-006
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.161184 0.194079 0.644737


MOTIF YUUCUU DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      YUUCUU        391        272   3.8e-007   1.5e-003
#           CUUCUU        124         71   6.6e-005   2.6e-001
#           UUUCUU        288        213   2.3e-004   9.2e-001

letter-probability matrix: alength= 4 w= 6 nsites= 422 E= 1.5e-003
0.000000 0.286730 0.000000 0.713270
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF UGUAAY DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      UGUAAY        246        158   2.8e-006   1.1e-002
#           UGUAAU        162        107   3.4e-004   1.3e+000
#           UGUAAC         88         54   2.4e-003   9.4e+000

letter-probability matrix: alength= 4 w= 6 nsites= 259 E= 1.1e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.351351 0.000000 0.648649


MOTIF AAGARA DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      AAGARA        240        154   3.7e-006   1.4e-002
#           AAGAAA        178        107   8.8e-006   3.4e-002
#           AAGAGA         80         49   3.6e-003   1.4e+001

letter-probability matrix: alength= 4 w= 6 nsites= 263 E= 1.4e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.707224 0.000000 0.292776 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 7.65 seconds