# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2355 from ./fasta/posSeq.fa (Fri Jun 25 23:25:57 CST 2021)
#   negatives: 2355 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Fri Jun 25 23:33:16 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.314 C 0.139 G 0.155 U 0.391


MOTIF AAKAAR DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      AAKAAR        599        351   1.0e-019   4.2e-016
#           AAUAAA        306        159   3.3e-013   1.4e-009
#           AAGAAA        191        127   1.2e-004   5.0e-001
#           AAUAAG        101         56   1.6e-004   6.7e-001
#           AAGAAG         75         42   1.3e-003   5.3e+000

letter-probability matrix: alength= 4 w= 6 nsites= 661 E= 4.2e-016
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.370651 0.629349
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.747352 0.000000 0.252648 0.000000


MOTIF SUUUKG DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      SUUUKG        476        276   8.9e-016   3.6e-012
#           CUUUUG        187        103   2.1e-007   8.3e-004
#           CUUUGG         64         27   5.7e-005   2.3e-001
#           GUUUGG         85         43   1.1e-004   4.3e-001
#           GUUUUG        167        114   6.7e-004   2.7e+000

letter-probability matrix: alength= 4 w= 6 nsites= 506 E= 3.6e-012
0.000000 0.500000 0.500000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.290514 0.709486
0.000000 0.000000 1.000000 0.000000


MOTIF RUAUAY DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      RUAUAY        370        200   1.5e-014   5.9e-011
#           AUAUAU        213        110   1.5e-009   6.1e-006
#           GUAUAU        102         58   2.5e-004   1.0e+000
#           AUAUAC         65         33   7.1e-004   2.8e+000
#           GUAUAC         42         18   1.3e-003   5.0e+000

letter-probability matrix: alength= 4 w= 6 nsites= 410 E= 5.9e-011
0.634146 0.000000 0.365854 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.231707 0.000000 0.768293


MOTIF CUYUGU DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      CUYUGU        216        109   4.0e-010   1.6e-006
#           CUUUGU        151         82   2.1e-006   8.3e-003
#           CUCUGU         68         27   1.3e-005   5.1e-002

letter-probability matrix: alength= 4 w= 6 nsites= 226 E= 1.6e-006
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.305310 0.000000 0.694690
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF UUUSUU DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUSUU        465        340   7.6e-007   3.0e-003
#           UUUCUU        261        193   4.6e-004   1.8e+000
#           UUUGUU        227        165   6.3e-004   2.5e+000

letter-probability matrix: alength= 4 w= 6 nsites= 515 E= 3.0e-003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.541748 0.458252 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 8.28 seconds