# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2370 from ./fasta/posSeq.fa (Fri Jun 25 23:25:56 CST 2021) # negatives: 2370 from shuffled positives # host: ubuntu-Super-Server # when: Fri Jun 25 23:33:00 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.316 C 0.139 G 0.155 U 0.390 MOTIF AURUAW DREME-1 # Word Pos Neg P-value E-value # BEST AURUAW 592 377 5.3e-015 2.1e-011 # AUAUAU 231 107 1.1e-012 4.6e-009 # AUAUAA 179 113 4.1e-005 1.6e-001 # AUGUAA 149 99 6.7e-004 2.7e+000 # AUGUAU 141 104 9.0e-003 3.7e+001 letter-probability matrix: alength= 4 w= 6 nsites= 677 E= 2.1e-011 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.564254 0.000000 0.435746 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.428360 0.000000 0.000000 0.571640 MOTIF VUUUKG DREME-2 # Word Pos Neg P-value E-value # BEST VUUUKG 708 495 6.7e-013 2.7e-009 # CUUUUG 174 101 3.4e-006 1.4e-002 # GUUUUG 168 113 4.3e-004 1.7e+000 # AUUUGG 101 64 2.1e-003 8.4e+000 # GUUUGG 80 49 3.6e-003 1.4e+001 # CUUUGG 55 30 4.1e-003 1.6e+001 # AUUUUG 227 180 8.5e-003 3.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 816 E= 2.7e-009 0.415441 0.283088 0.301471 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.284314 0.715686 0.000000 0.000000 1.000000 0.000000 MOTIF AAKAAA DREME-3 # Word Pos Neg P-value E-value # BEST AAKAAA 454 284 5.4e-012 2.1e-008 # AAUAAA 284 173 2.7e-008 1.1e-004 # AAGAAA 193 123 2.8e-005 1.1e-001 letter-probability matrix: alength= 4 w= 6 nsites= 495 E= 2.1e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.397980 0.602020 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACUYUG DREME-4 # Word Pos Neg P-value E-value # BEST ACUYUG 130 65 1.2e-006 4.6e-003 # ACUUUG 91 47 9.1e-005 3.6e-001 # ACUCUG 40 18 2.5e-003 1.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 133 E= 4.6e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.308271 0.000000 0.691729 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF YUUCUU DREME-5 # Word Pos Neg P-value E-value # BEST YUUCUU 377 269 2.8e-006 1.1e-002 # CUUCUU 118 73 5.5e-004 2.2e+000 # UUUCUU 279 210 5.7e-004 2.2e+000 letter-probability matrix: alength= 4 w= 6 nsites= 405 E= 1.1e-002 0.000000 0.279012 0.000000 0.720988 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AARCCA DREME-6 # Word Pos Neg P-value E-value # BEST AARCCA 83 36 7.7e-006 3.0e-002 # AAACCA 63 29 2.2e-004 8.8e-001 # AAGCCA 22 7 4.0e-003 1.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 85 E= 3.0e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.741176 0.000000 0.258824 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF UGKAAC DREME-7 # Word Pos Neg P-value E-value # BEST UGKAAC 88 40 1.0e-005 4.0e-002 # UGUAAC 56 27 8.8e-004 3.4e+000 # UGGAAC 32 13 3.2e-003 1.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 90 E= 4.0e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.355556 0.644444 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 8.88 seconds