# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2272 from ./fasta/posSeq.fa (Fri Jun 25 23:25:56 CST 2021)
#   negatives: 2272 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Fri Jun 25 23:32:51 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.316 C 0.139 G 0.155 U 0.390


MOTIF WAUAWA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      WAUAWA        690        406   3.2e-023   1.3e-019
#           UAUAUA        200         77   7.6e-015   3.1e-011
#           AAUAAA        295        162   2.8e-011   1.2e-007
#           AAUAUA        152        104   1.2e-003   4.9e+000
#           UAUAAA        173        124   1.9e-003   7.9e+000

letter-probability matrix: alength= 4 w= 6 nsites= 785 E= 1.3e-019
0.574522 0.000000 0.000000 0.425478
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.560510 0.000000 0.000000 0.439490
1.000000 0.000000 0.000000 0.000000


MOTIF UUUKGK DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUKGK        586        396   4.3e-012   1.7e-008
#           UUUGGU        174         96   5.8e-007   2.3e-003
#           UUUUGU        339        247   2.7e-005   1.1e-001
#           UUUUGG        155         98   1.4e-004   5.5e-001
#           UUUGGG         57         29   1.5e-003   6.1e+000

letter-probability matrix: alength= 4 w= 6 nsites= 659 E= 1.7e-008
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.207891 0.792109
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.289833 0.710167


MOTIF AKAAGA DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      AKAAGA        158         77   3.2e-008   1.3e-004
#           AGAAGA         73         31   1.9e-005   7.5e-002
#           AUAAGA         90         48   1.8e-004   7.1e-001

letter-probability matrix: alength= 4 w= 6 nsites= 166 E= 1.3e-004
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.439759 0.560241
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GUUKCU DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      GUUKCU        160         82   1.5e-007   5.8e-004
#           GUUUCU        123         63   4.2e-006   1.7e-002
#           GUUGCU         40         19   4.1e-003   1.6e+001

letter-probability matrix: alength= 4 w= 6 nsites= 167 E= 5.8e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.239521 0.760479
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF HUGUAA DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      HUGUAA        341        233   8.3e-007   3.3e-003
#           CUGUAA         66         38   3.6e-003   1.4e+001
#           AUGUAA        136         96   4.2e-003   1.7e+001
#           UUGUAA        153        111   4.6e-003   1.8e+001

letter-probability matrix: alength= 4 w= 6 nsites= 364 E= 3.3e-003
0.381868 0.181319 0.000000 0.436813
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF UYCUCU DREME-6

#             Word        Pos        Neg    P-value    E-value
# BEST      UYCUCU        130         67   2.7e-006   1.0e-002
#           UUCUCU        101         54   7.7e-005   3.0e-001
#           UCCUCU         32         14   5.5e-003   2.1e+001

letter-probability matrix: alength= 4 w= 6 nsites= 134 E= 1.0e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.246269 0.000000 0.753731
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 8.03 seconds