# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2194 from ./fasta/posSeq.fa (Sat Jun 12 20:52:05 CST 2021) # negatives: 2194 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 20:02:37 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.314 C 0.137 G 0.154 U 0.394 MOTIF YAUAUA DREME-1 # Word Pos Neg P-value E-value # BEST YAUAUA 268 106 5.0e-019 2.0e-015 # UAUAUA 207 74 5.7e-017 2.3e-013 # CAUAUA 78 37 6.8e-005 2.7e-001 letter-probability matrix: alength= 4 w= 6 nsites= 292 E= 2.0e-015 0.000000 0.273973 0.000000 0.726027 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAKAAA DREME-2 # Word Pos Neg P-value E-value # BEST AAKAAA 444 241 1.4e-017 5.6e-014 # AAUAAA 305 157 1.6e-013 6.4e-010 # AAGAAA 169 95 1.6e-006 6.3e-003 letter-probability matrix: alength= 4 w= 6 nsites= 481 E= 5.6e-014 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.340956 0.659044 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF SUUUUG DREME-3 # Word Pos Neg P-value E-value # BEST SUUUUG 338 203 3.2e-010 1.3e-006 # CUUUUG 173 97 1.1e-006 4.2e-003 # GUUUUG 173 111 8.6e-005 3.4e-001 letter-probability matrix: alength= 4 w= 6 nsites= 355 E= 1.3e-006 0.000000 0.492958 0.507042 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF UGUAWC DREME-4 # Word Pos Neg P-value E-value # BEST UGUAWC 134 63 1.3e-007 5.0e-004 # UGUAAC 76 36 8.2e-005 3.2e-001 # UGUAUC 58 28 7.2e-004 2.8e+000 letter-probability matrix: alength= 4 w= 6 nsites= 135 E= 5.0e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.570370 0.000000 0.000000 0.429630 0.000000 1.000000 0.000000 0.000000 MOTIF AGCYUC DREME-5 # Word Pos Neg P-value E-value # BEST AGCYUC 32 5 3.4e-006 1.3e-002 # AGCUUC 25 5 1.6e-004 6.1e-001 # AGCCUC 7 0 7.8e-003 3.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 32 E= 1.3e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.218750 0.000000 0.781250 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RAGAGA DREME-6 # Word Pos Neg P-value E-value # BEST RAGAGA 99 46 4.6e-006 1.8e-002 # AAGAGA 72 32 4.5e-005 1.8e-001 # GAGAGA 35 16 5.3e-003 2.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 104 E= 1.8e-002 0.711538 0.000000 0.288462 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GUUWCU DREME-7 # Word Pos Neg P-value E-value # BEST GUUWCU 179 107 6.4e-006 2.5e-002 # GUUUCU 126 81 8.4e-004 3.3e+000 # GUUACU 55 27 1.2e-003 4.7e+000 letter-probability matrix: alength= 4 w= 6 nsites= 184 E= 2.5e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.298913 0.000000 0.000000 0.701087 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 # Stopping reason: E-value threshold exceeded # Running time: 12.98 seconds