# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2321 from ./fasta/posSeq.fa (Sat Jun 12 20:52:05 CST 2021)
#   negatives: 2321 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 20:02:25 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.315 C 0.137 G 0.154 U 0.394


MOTIF WAURUA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      WAURUA        566        294   3.2e-025   1.3e-021
#           UAUAUA        221         72   3.5e-020   1.4e-016
#           AAUAUA        181        100   3.6e-007   1.5e-003
#           UAUGUA        138         84   1.3e-004   5.2e-001
#           AAUGUA        121         76   6.5e-004   2.7e+000

letter-probability matrix: alength= 4 w= 6 nsites= 645 E= 1.3e-021
0.460465 0.000000 0.000000 0.539535
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.604651 0.000000 0.395349 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAKAAA DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      AAKAAA        460        263   7.6e-016   3.1e-012
#           AAUAAA        313        166   6.5e-013   2.6e-009
#           AAGAAA        178        112   3.8e-005   1.5e-001

letter-probability matrix: alength= 4 w= 6 nsites= 498 E= 3.1e-012
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.347390 0.652610
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF SUUUKG DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      SUUUKG        460        264   1.1e-015   4.4e-012
#           CUUUUG        178         94   8.7e-008   3.5e-004
#           GUUUUG        185        123   1.5e-004   6.2e-001
#           GUUUGG         73         36   2.2e-004   8.7e-001
#           CUUUGG         51         27   4.1e-003   1.6e+001

letter-probability matrix: alength= 4 w= 6 nsites= 494 E= 4.4e-012
0.000000 0.467611 0.532389 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.246964 0.753036
0.000000 0.000000 1.000000 0.000000


MOTIF KCUCUU DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      KCUCUU        133         64   2.9e-007   1.1e-003
#           UCUCUU        108         56   2.2e-005   8.7e-002
#           GCUCUU         26         10   5.5e-003   2.2e+001

letter-probability matrix: alength= 4 w= 6 nsites= 138 E= 1.1e-003
0.000000 0.000000 0.195652 0.804348
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF URAAAC DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      URAAAC        182        106   2.2e-006   8.9e-003
#           UAAAAC        101         57   2.3e-004   9.2e-001
#           UGAAAC         82         50   3.0e-003   1.2e+001

letter-probability matrix: alength= 4 w= 6 nsites= 192 E= 8.9e-003
0.000000 0.000000 0.000000 1.000000
0.552083 0.000000 0.447917 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGGUU DREME-6

#             Word        Pos        Neg    P-value    E-value
# BEST      CCGGUU         20          1   1.0e-005   4.0e-002
#           CCGGUU         20          1   1.0e-005   4.0e-002

letter-probability matrix: alength= 4 w= 6 nsites= 20 E= 4.0e-002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 11.41 seconds