# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 1058 from ./fasta/posSeq.fa (Sat Jun 12 20:52:05 CST 2021)
#   negatives: 1058 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 20:02:06 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.310 C 0.135 G 0.152 U 0.403


MOTIF AAKAAA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      AAKAAA        231        122   1.2e-010   4.3e-007
#           AAUAAA        163         83   3.4e-008   1.2e-004
#           AAGAAA         88         44   4.9e-005   1.8e-001

letter-probability matrix: alength= 4 w= 6 nsites= 259 E= 4.3e-007
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.328185 0.671815
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF YAUAUA DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      YAUAUA        127         57   3.7e-008   1.4e-004
#           UAUAUA         92         40   1.8e-006   6.4e-003
#           CAUAUA         42         20   3.2e-003   1.2e+001

letter-probability matrix: alength= 4 w= 6 nsites= 141 E= 1.4e-004
0.000000 0.312057 0.000000 0.687943
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 2.34 seconds