# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2362 from ./fasta/posSeq.fa (Sat Jun 12 20:52:04 CST 2021) # negatives: 2362 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 20:01:54 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.316 C 0.137 G 0.154 U 0.393 MOTIF UAURUA DREME-1 # Word Pos Neg P-value E-value # BEST UAURUA 342 159 1.8e-018 7.6e-015 # UAUAUA 219 97 5.0e-013 2.1e-009 # UAUGUA 142 65 2.4e-008 9.7e-005 letter-probability matrix: alength= 4 w= 6 nsites= 378 E= 7.6e-015 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.624339 0.000000 0.375661 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAUVAA DREME-2 # Word Pos Neg P-value E-value # BEST AAUVAA 575 367 2.0e-014 8.0e-011 # AAUAAA 325 189 1.1e-010 4.6e-007 # AAUGAA 174 116 2.7e-004 1.1e+000 # AAUCAA 132 96 8.7e-003 3.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 624 E= 8.0e-011 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.522436 0.201923 0.275641 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF SUUUUG DREME-3 # Word Pos Neg P-value E-value # BEST SUUUUG 360 216 8.4e-011 3.4e-007 # CUUUUG 183 109 4.7e-006 1.9e-002 # GUUUUG 186 113 7.8e-006 3.1e-002 letter-probability matrix: alength= 4 w= 6 nsites= 379 E= 3.4e-007 0.000000 0.488127 0.511873 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF UUUGGU DREME-4 # Word Pos Neg P-value E-value # BEST UUUGGU 151 75 1.3e-007 5.0e-004 # UUUGGU 151 75 1.3e-007 5.0e-004 letter-probability matrix: alength= 4 w= 6 nsites= 156 E= 5.0e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF YUUCUU DREME-5 # Word Pos Neg P-value E-value # BEST YUUCUU 400 277 1.9e-007 7.6e-004 # CUUCUU 122 72 1.5e-004 6.1e-001 # UUUCUU 298 220 1.6e-004 6.5e-001 letter-probability matrix: alength= 4 w= 6 nsites= 434 E= 7.6e-004 0.000000 0.267281 0.000000 0.732719 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AUACRA DREME-6 # Word Pos Neg P-value E-value # BEST AUACRA 113 52 7.7e-007 3.1e-003 # AUACAA 90 47 1.2e-004 4.8e-001 # AUACGA 23 5 4.4e-004 1.7e+000 letter-probability matrix: alength= 4 w= 6 nsites= 114 E= 3.1e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.798246 0.000000 0.201754 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAGARA DREME-7 # Word Pos Neg P-value E-value # BEST AAGARA 231 143 1.3e-006 5.0e-003 # AAGAGA 81 40 1.0e-004 4.0e-001 # AAGAAA 161 107 4.1e-004 1.6e+000 letter-probability matrix: alength= 4 w= 6 nsites= 245 E= 5.0e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.665306 0.000000 0.334694 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 12.19 seconds