# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2226 from ./fasta/posSeq.fa (Sat Jun 12 20:52:04 CST 2021) # negatives: 2226 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 20:01:26 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.315 C 0.137 G 0.154 U 0.394 MOTIF AURUAW DREME-1 # Word Pos Neg P-value E-value # BEST AURUAW 587 321 1.8e-023 7.3e-020 # AUAUAU 231 91 1.6e-016 6.5e-013 # AUAUAA 180 99 3.2e-007 1.3e-003 # AUGUAA 144 79 4.8e-006 1.9e-002 # AUGUAU 135 89 9.9e-004 4.0e+000 letter-probability matrix: alength= 4 w= 6 nsites= 678 E= 7.3e-020 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.584071 0.000000 0.415929 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.435103 0.000000 0.000000 0.564897 MOTIF AAKAAR DREME-2 # Word Pos Neg P-value E-value # BEST AAKAAR 547 367 1.4e-011 5.5e-008 # AAUAAA 299 185 2.3e-008 9.4e-005 # AAGAAG 71 39 1.3e-003 5.2e+000 # AAGAAA 171 123 2.2e-003 9.0e+000 # AAUAAG 83 53 5.6e-003 2.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 607 E= 5.5e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.352554 0.647446 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.762768 0.000000 0.237232 0.000000 MOTIF SUUUUG DREME-3 # Word Pos Neg P-value E-value # BEST SUUUUG 344 203 6.7e-011 2.7e-007 # CUUUUG 174 101 3.3e-006 1.3e-002 # GUUUUG 178 107 8.3e-006 3.3e-002 letter-probability matrix: alength= 4 w= 6 nsites= 360 E= 2.7e-007 0.000000 0.488889 0.511111 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GUUUCY DREME-4 # Word Pos Neg P-value E-value # BEST GUUUCY 169 82 8.5e-009 3.3e-005 # GUUUCU 130 65 1.1e-006 4.5e-003 # GUUUCC 40 17 1.5e-003 5.9e+000 letter-probability matrix: alength= 4 w= 6 nsites= 173 E= 3.3e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.231214 0.000000 0.768786 MOTIF KUUGUA DREME-5 # Word Pos Neg P-value E-value # BEST KUUGUA 270 174 9.3e-007 3.7e-003 # UUUGUA 194 131 1.7e-004 6.7e-001 # GUUGUA 80 48 2.6e-003 1.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 283 E= 3.7e-003 0.000000 0.000000 0.282686 0.717314 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RGCUUU DREME-6 # Word Pos Neg P-value E-value # BEST RGCUUU 94 42 3.5e-006 1.4e-002 # GGCUUU 39 10 1.8e-005 6.9e-002 # AGCUUU 58 32 3.7e-003 1.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 97 E= 1.4e-002 0.597938 0.000000 0.402062 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF URAAAC DREME-7 # Word Pos Neg P-value E-value # BEST URAAAC 165 98 1.2e-005 4.9e-002 # UAAAAC 85 48 7.2e-004 2.8e+000 # UGAAAC 81 51 5.1e-003 2.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 172 E= 4.9e-002 0.000000 0.000000 0.000000 1.000000 0.511628 0.000000 0.488372 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 10.57 seconds