# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2265 from ./fasta/posSeq.fa (Sat Jun 12 20:52:03 CST 2021)
#   negatives: 2265 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 20:01:04 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.315 C 0.137 G 0.154 U 0.395


MOTIF AURUAW DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      AURUAW        599        363   5.1e-018   2.1e-014
#           AUAUAU        232        107   7.4e-013   3.0e-009
#           AUAUAA        183        110   6.2e-006   2.5e-002
#           AUGUAU        138         76   8.6e-006   3.5e-002
#           AUGUAA        151        100   5.6e-004   2.3e+000

letter-probability matrix: alength= 4 w= 6 nsites= 691 E= 2.1e-014
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.577424 0.000000 0.422576 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.439942 0.000000 0.000000 0.560058


MOTIF SUUUUS DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      SUUUUS        526        318   1.1e-015   4.3e-012
#           CUUUUG        175         87   1.2e-008   4.7e-005
#           GUUUUG        180        113   3.1e-005   1.3e-001
#           GUUUUC        121         73   2.7e-004   1.1e+000
#           CUUUUC         96         64   6.2e-003   2.5e+001

letter-probability matrix: alength= 4 w= 6 nsites= 579 E= 4.3e-012
0.000000 0.471503 0.528497 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.373057 0.626943 0.000000


MOTIF AAYMAA DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      AAYMAA        568        363   2.6e-014   1.0e-010
#           AAUAAA        300        169   9.1e-011   3.6e-007
#           AACAAA        147         96   4.7e-004   1.9e+000
#           AACCAA         64         36   3.0e-003   1.2e+001
#           AAUCAA        130         91   4.3e-003   1.7e+001

letter-probability matrix: alength= 4 w= 6 nsites= 618 E= 1.0e-010
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.322006 0.000000 0.677994
0.711974 0.288026 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF YUUCUU DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      YUUCUU        346        242   2.5e-006   9.9e-003
#           UUUCUU        248        172   5.9e-005   2.3e-001
#           CUUCUU        113         79   7.4e-003   2.9e+001

letter-probability matrix: alength= 4 w= 6 nsites= 370 E= 9.9e-003
0.000000 0.294595 0.000000 0.705405
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AUAAGA DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      AUAAGA         91         41   6.0e-006   2.4e-002
#           AUAAGA         91         41   6.0e-006   2.4e-002

letter-probability matrix: alength= 4 w= 6 nsites= 95 E= 2.4e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF UUUKGU DREME-6

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUKGU        367        266   8.8e-006   3.5e-002
#           UUUGGU        138         84   1.2e-004   4.9e-001
#           UUUUGU        239        188   5.5e-003   2.1e+001

letter-probability matrix: alength= 4 w= 6 nsites= 390 E= 3.5e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.361538 0.638462
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 11.03 seconds