# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2309 from ./fasta/posSeq.fa (Sat Jun 12 20:52:03 CST 2021) # negatives: 2309 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 20:00:50 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.315 C 0.137 G 0.154 U 0.394 MOTIF WAUAWA DREME-1 # Word Pos Neg P-value E-value # BEST WAUAWA 738 444 1.7e-023 7.0e-020 # UAUAUA 222 86 3.0e-016 1.2e-012 # AAUAAA 322 179 6.9e-012 2.8e-008 # AAUAUA 179 119 2.0e-004 8.1e-001 # UAUAAA 170 121 1.8e-003 7.3e+000 letter-probability matrix: alength= 4 w= 6 nsites= 843 E= 7.0e-020 0.593120 0.000000 0.000000 0.406880 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.546856 0.000000 0.000000 0.453144 1.000000 0.000000 0.000000 0.000000 MOTIF SUUUUG DREME-2 # Word Pos Neg P-value E-value # BEST SUUUUG 352 199 2.0e-012 7.9e-009 # CUUUUG 175 88 1.8e-008 7.3e-005 # GUUUUG 185 117 3.1e-005 1.2e-001 letter-probability matrix: alength= 4 w= 6 nsites= 370 E= 7.9e-009 0.000000 0.478378 0.521622 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CUYUGU DREME-3 # Word Pos Neg P-value E-value # BEST CUYUGU 202 107 1.2e-008 4.9e-005 # CUUUGU 152 78 3.2e-007 1.3e-003 # CUCUGU 52 29 6.6e-003 2.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 212 E= 4.9e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF UUUGGU DREME-4 # Word Pos Neg P-value E-value # BEST UUUGGU 147 71 7.5e-008 3.0e-004 # UUUGGU 147 71 7.5e-008 3.0e-004 letter-probability matrix: alength= 4 w= 6 nsites= 152 E= 3.0e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF YUUCUU DREME-5 # Word Pos Neg P-value E-value # BEST YUUCUU 377 256 1.3e-007 5.2e-004 # CUUCUU 116 59 6.8e-006 2.7e-002 # UUUCUU 280 209 4.0e-004 1.6e+000 letter-probability matrix: alength= 4 w= 6 nsites= 406 E= 5.2e-004 0.000000 0.268473 0.000000 0.731527 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AAGAAM DREME-6 # Word Pos Neg P-value E-value # BEST AAGAAM 217 129 5.1e-007 2.0e-003 # AAGAAA 164 107 2.2e-004 8.6e-001 # AAGAAC 55 24 2.9e-004 1.1e+000 letter-probability matrix: alength= 4 w= 6 nsites= 226 E= 2.0e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.761062 0.238938 0.000000 0.000000 MOTIF WUGUAA DREME-7 # Word Pos Neg P-value E-value # BEST WUGUAA 299 199 1.2e-006 4.9e-003 # AUGUAA 146 90 1.1e-004 4.4e-001 # UUGUAA 159 118 6.5e-003 2.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 314 E= 4.9e-003 0.468153 0.000000 0.000000 0.531847 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 14.12 seconds