# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2245 from ./fasta/posSeq.fa (Sat Jun 12 20:52:03 CST 2021) # negatives: 2245 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 20:00:38 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.315 C 0.137 G 0.155 U 0.393 MOTIF WAUAWA DREME-1 # Word Pos Neg P-value E-value # BEST WAUAWA 732 431 5.1e-025 2.1e-021 # AAUAAA 320 175 2.5e-012 1.0e-008 # UAUAUA 206 96 2.7e-011 1.1e-007 # AAUAUA 170 105 3.2e-005 1.3e-001 # UAUAAA 187 121 5.9e-005 2.4e-001 letter-probability matrix: alength= 4 w= 6 nsites= 839 E= 2.1e-021 0.582837 0.000000 0.000000 0.417163 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.568534 0.000000 0.000000 0.431466 1.000000 0.000000 0.000000 0.000000 MOTIF SUUUUS DREME-2 # Word Pos Neg P-value E-value # BEST SUUUUS 504 312 5.9e-014 2.4e-010 # CUUUUG 163 91 2.0e-006 7.9e-003 # GUUUUG 171 102 9.9e-006 4.0e-002 # CUUUUC 101 62 1.2e-003 4.7e+000 # GUUUUC 111 75 4.3e-003 1.7e+001 letter-probability matrix: alength= 4 w= 6 nsites= 553 E= 2.4e-010 0.000000 0.482821 0.517179 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.381555 0.618445 0.000000 MOTIF UGUAWS DREME-3 # Word Pos Neg P-value E-value # BEST UGUAWS 283 169 9.0e-009 3.6e-005 # UGUAAC 78 43 8.1e-004 3.2e+000 # UGUAAG 67 37 1.9e-003 7.5e+000 # UGUAUG 92 59 3.9e-003 1.6e+001 # UGUAUC 61 36 6.7e-003 2.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 301 E= 3.6e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.481728 0.000000 0.000000 0.518272 0.000000 0.465116 0.534884 0.000000 MOTIF UUKGKU DREME-4 # Word Pos Neg P-value E-value # BEST UUKGKU 460 327 1.0e-007 4.1e-004 # UUUGGU 131 80 2.0e-004 7.9e-001 # UUUGUU 272 200 2.7e-004 1.1e+000 # UUGGUU 120 79 1.8e-003 7.1e+000 # UUGGGU 40 21 9.8e-003 3.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 508 E= 4.1e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.187008 0.812992 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.330709 0.669291 0.000000 0.000000 0.000000 1.000000 MOTIF ACCMAA DREME-5 # Word Pos Neg P-value E-value # BEST ACCMAA 95 39 5.0e-007 2.0e-003 # ACCAAA 74 31 1.3e-005 5.2e-002 # ACCCAA 22 8 7.9e-003 3.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 96 E= 2.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.770833 0.229167 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AKAAGA DREME-6 # Word Pos Neg P-value E-value # BEST AKAAGA 138 75 5.9e-006 2.3e-002 # AGAAGA 66 30 1.3e-004 5.2e-001 # AUAAGA 80 46 1.4e-003 5.3e+000 letter-probability matrix: alength= 4 w= 6 nsites= 144 E= 2.3e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.444444 0.555556 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF UUUCUY DREME-7 # Word Pos Neg P-value E-value # BEST UUUCUY 319 224 8.1e-006 3.2e-002 # UUUCUU 230 168 6.7e-004 2.6e+000 # UUUCUC 100 62 1.5e-003 5.8e+000 letter-probability matrix: alength= 4 w= 6 nsites= 347 E= 3.2e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.288184 0.000000 0.711816 # Stopping reason: E-value threshold exceeded # Running time: 10.76 seconds