# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2022 from ./fasta/posSeq.fa (Sat Jun 12 20:52:02 CST 2021)
#   negatives: 2022 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 20:00:30 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.316 C 0.136 G 0.156 U 0.392


MOTIF UVUAUA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      UVUAUA        349        172   4.0e-017   1.6e-013
#           UAUAUA        202         87   9.2e-013   3.7e-009
#           UGUAUA        128         67   4.6e-006   1.8e-002
#           UCUAUA         74         45   4.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 6 nsites= 384 E= 1.6e-013
0.000000 0.000000 0.000000 1.000000
0.468750 0.195312 0.335938 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAURAA DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      AAURAA        424        253   3.2e-013   1.3e-009
#           AAUAAA        286        161   2.0e-010   7.9e-007
#           AAUGAA        154        104   7.9e-004   3.1e+000

letter-probability matrix: alength= 4 w= 6 nsites= 447 E= 1.3e-009
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.653244 0.000000 0.346756 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF UUUGKW DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUGKW        669        484   6.9e-011   2.7e-007
#           UUUGGU        152         88   1.2e-005   4.9e-002
#           UUUGUU        310        225   4.7e-005   1.9e-001
#           UUUGGA        104         66   1.8e-003   7.1e+000
#           UUUGUA        191        147   7.2e-003   2.9e+001

letter-probability matrix: alength= 4 w= 6 nsites= 776 E= 2.7e-007
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.328608 0.671392
0.377577 0.000000 0.000000 0.622423


MOTIF UGAACC DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      UGAACC         33          6   6.5e-006   2.6e-002
#           UGAACC         33          6   6.5e-006   2.6e-002

letter-probability matrix: alength= 4 w= 6 nsites= 33 E= 2.6e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF WUGUAA DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      WUGUAA        224        145   9.6e-006   3.8e-002
#           AUGUAA        125         80   7.8e-004   3.0e+000
#           UUGUAA        104         67   2.4e-003   9.3e+000

letter-probability matrix: alength= 4 w= 6 nsites= 236 E= 3.8e-002
0.542373 0.000000 0.000000 0.457627
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 8.07 seconds