# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2009 from ./fasta/posSeq.fa (Sat Jun 12 20:52:02 CST 2021)
#   negatives: 2009 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 20:00:12 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.315 C 0.136 G 0.156 U 0.393


MOTIF WAUAWA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      WAUAWA        661        415   1.0e-018   4.0e-015
#           UAUAUA        202         79   9.1e-015   3.7e-011
#           AAUAAA        284        181   2.2e-007   9.0e-004
#           AAUAUA        157        104   4.2e-004   1.7e+000
#           UAUAAA        165        121   4.1e-003   1.7e+001

letter-probability matrix: alength= 4 w= 6 nsites= 768 E= 4.0e-015
0.572917 0.000000 0.000000 0.427083
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.545573 0.000000 0.000000 0.454427
1.000000 0.000000 0.000000 0.000000


MOTIF UUUGKW DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUGKW        673        470   7.4e-013   2.9e-009
#           UUUGUA        201        120   1.5e-006   5.8e-003
#           UUUGGU        150         88   2.1e-005   8.3e-002
#           UUUGUU        305        233   5.0e-004   2.0e+000
#           UUUGGA        107         72   4.6e-003   1.8e+001

letter-probability matrix: alength= 4 w= 6 nsites= 782 E= 2.9e-009
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.328645 0.671355
0.391304 0.000000 0.000000 0.608696


MOTIF GAGARA DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      GAGARA         94         42   3.4e-006   1.3e-002
#           GAGAAA         73         33   5.2e-005   2.0e-001
#           GAGAGA         28         10   2.4e-003   9.6e+000

letter-probability matrix: alength= 4 w= 6 nsites= 98 E= 1.3e-002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.704082 0.000000 0.295918 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF RGCUUU DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      RGCUUU        101         48   5.8e-006   2.3e-002
#           GGCUUU         42         11   1.0e-005   3.9e-002
#           AGCUUU         62         37   7.1e-003   2.8e+001

letter-probability matrix: alength= 4 w= 6 nsites= 105 E= 2.3e-002
0.590476 0.000000 0.409524 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CUCUKU DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      CUCUKU        136         75   9.8e-006   3.8e-002
#           CUCUGU         53         26   1.4e-003   5.7e+000
#           CUCUUU         86         51   1.5e-003   5.8e+000

letter-probability matrix: alength= 4 w= 6 nsites= 146 E= 3.8e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.363014 0.636986
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 9.35 seconds