# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2351 from ./fasta/posSeq.fa (Sat Jun 12 20:52:02 CST 2021)
#   negatives: 2351 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 20:00:02 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.315 C 0.137 G 0.156 U 0.392


MOTIF AURUAW DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      AURUAW        625        364   4.5e-021   1.8e-017
#           AUAUAU        238         93   3.8e-017   1.6e-013
#           AUAUAA        185        111   5.3e-006   2.2e-002
#           AUGUAA        153         90   2.0e-005   8.3e-002
#           AUGUAU        151         97   2.6e-004   1.1e+000

letter-probability matrix: alength= 4 w= 6 nsites= 722 E= 1.8e-017
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.572022 0.000000 0.427978 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.436288 0.000000 0.000000 0.563712


MOTIF AAKAAR DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      AAKAAR        585        370   3.5e-015   1.4e-011
#           AAUAAA        322        189   2.6e-010   1.0e-006
#           AAGAAG         86         40   2.0e-005   8.2e-002
#           AAGAAA        180        126   8.4e-004   3.4e+000
#           AAUAAG         77         50   9.5e-003   3.8e+001

letter-probability matrix: alength= 4 w= 6 nsites= 658 E= 1.4e-011
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.378419 0.621581
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.762918 0.000000 0.237082 0.000000


MOTIF UUUGBU DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUGBU        581        399   3.7e-011   1.5e-007
#           UUUGGU        175         95   3.1e-007   1.2e-003
#           UUUGUU        361        275   1.4e-004   5.7e-001
#           UUUGCU         82         54   9.2e-003   3.7e+001

letter-probability matrix: alength= 4 w= 6 nsites= 640 E= 1.5e-007
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.126562 0.273438 0.600000
0.000000 0.000000 0.000000 1.000000


MOTIF CUYUGU DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      CUYUGU        170         87   5.7e-008   2.3e-004
#           CUUUGU        111         55   5.8e-006   2.3e-002
#           CUCUGU         63         32   8.6e-004   3.4e+000

letter-probability matrix: alength= 4 w= 6 nsites= 178 E= 2.3e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.359551 0.000000 0.640449
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF GAAMCA DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      GAAMCA         99         44   1.7e-006   6.9e-003
#           GAAACA         68         34   4.3e-004   1.7e+000
#           GAACCA         31         10   6.9e-004   2.7e+000

letter-probability matrix: alength= 4 w= 6 nsites= 100 E= 6.9e-003
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.690000 0.310000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF UGUAAY DREME-6

#             Word        Pos        Neg    P-value    E-value
# BEST      UGUAAY        188        114   6.5e-006   2.5e-002
#           UGUAAU        133         81   1.7e-004   6.7e-001
#           UGUAAC         57         34   9.7e-003   3.8e+001

letter-probability matrix: alength= 4 w= 6 nsites= 197 E= 2.5e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.294416 0.000000 0.705584


# Stopping reason: E-value threshold exceeded
#    Running time: 9.70 seconds