# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2289 from ./fasta/posSeq.fa (Sat Jun 12 20:52:01 CST 2021)
#   negatives: 2289 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:59:43 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.316 C 0.137 G 0.156 U 0.392


MOTIF WAUAWA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      WAUAWA        740        435   2.5e-025   1.0e-021
#           UAUAUA        211         97   8.0e-012   3.3e-008
#           AAUAAA        329        187   1.7e-011   7.0e-008
#           AAUAUA        170        108   7.6e-005   3.1e-001
#           UAUAAA        180        126   8.4e-004   3.4e+000

letter-probability matrix: alength= 4 w= 6 nsites= 849 E= 1.0e-021
0.590106 0.000000 0.000000 0.409894
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.566549 0.000000 0.000000 0.433451
1.000000 0.000000 0.000000 0.000000


MOTIF YUUUGK DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      YUUUGK        659        439   1.5e-014   5.9e-011
#           CUUUGU        151         82   2.1e-006   8.3e-003
#           UUUUGG        167        101   2.0e-005   7.9e-002
#           UUUUGU        345        252   2.6e-005   1.0e-001
#           CUUUGG         54         30   5.4e-003   2.2e+001

letter-probability matrix: alength= 4 w= 6 nsites= 753 E= 5.9e-011
0.000000 0.282869 0.000000 0.717131
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.305445 0.694555


MOTIF UGUAAY DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      UGUAAY        242        146   2.1e-007   8.1e-004
#           UGUAAU        176        109   2.5e-005   1.0e-001
#           UGUAAC         71         37   6.1e-004   2.4e+000

letter-probability matrix: alength= 4 w= 6 nsites= 257 E= 8.1e-004
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.284047 0.000000 0.715953


MOTIF GAAMCA DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      GAAMCA        108         49   9.6e-007   3.8e-003
#           GAAACA         80         39   8.9e-005   3.5e-001
#           GAACCA         28         10   2.5e-003   9.7e+000

letter-probability matrix: alength= 4 w= 6 nsites= 111 E= 3.8e-003
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.747748 0.252252 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF UUUCUY DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUCUY        350        250   7.0e-006   2.7e-002
#           UUUCUU        258        188   2.9e-004   1.1e+000
#           UUUCUC        109         72   3.1e-003   1.2e+001

letter-probability matrix: alength= 4 w= 6 nsites= 385 E= 2.7e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.277922 0.000000 0.722078


# Stopping reason: E-value threshold exceeded
#    Running time: 9.19 seconds