# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2085 from ./fasta/posSeq.fa (Sat Jun 12 20:52:01 CST 2021)
#   negatives: 2085 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:59:34 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.316 C 0.136 G 0.156 U 0.392


MOTIF WAUAWA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      WAUAWA        692        405   2.7e-024   1.1e-020
#           AAUAAA        299        148   1.8e-014   7.3e-011
#           UAUAUA        207         93   3.7e-012   1.5e-008
#           AAUAUA        159         98   5.2e-005   2.1e-001
#           UAUAAA        174        127   2.9e-003   1.2e+001

letter-probability matrix: alength= 4 w= 6 nsites= 800 E= 1.1e-020
0.571250 0.000000 0.000000 0.428750
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.553750 0.000000 0.000000 0.446250
1.000000 0.000000 0.000000 0.000000


MOTIF UUUKGU DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUKGU        455        291   2.0e-011   7.7e-008
#           UUUGGU        159         75   8.5e-009   3.3e-005
#           UUUUGU        316        226   2.0e-005   8.0e-002

letter-probability matrix: alength= 4 w= 6 nsites= 503 E= 7.7e-008
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.332008 0.667992
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF UGUAAY DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      UGUAAY        220        113   5.2e-010   2.0e-006
#           UGUAAC         68         25   3.7e-006   1.5e-002
#           UGUAAU        157         90   6.7e-006   2.6e-002

letter-probability matrix: alength= 4 w= 6 nsites= 235 E= 2.0e-006
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.297872 0.000000 0.702128


MOTIF AGYUUU DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      AGYUUU        204        126   4.6e-006   1.8e-002
#           AGCUUU         65         31   2.9e-004   1.1e+000
#           AGUUUU        141         97   2.0e-003   7.9e+000

letter-probability matrix: alength= 4 w= 6 nsites= 209 E= 1.8e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.311005 0.000000 0.688995
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 8.21 seconds