# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2466 from ./fasta/posSeq.fa (Sat Jun 12 20:52:00 CST 2021) # negatives: 2466 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 19:59:20 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.308 C 0.137 G 0.156 U 0.399 MOTIF AAKAAR DREME-1 # Word Pos Neg P-value E-value # BEST AAKAAR 637 367 5.9e-022 2.4e-018 # AAUAAA 326 171 1.1e-013 4.5e-010 # AAGAAA 198 115 7.4e-007 3.0e-003 # AAGAAG 89 44 4.8e-005 2.0e-001 # AAUAAG 112 70 9.4e-004 3.9e+000 letter-probability matrix: alength= 4 w= 6 nsites= 711 E= 2.4e-018 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.365682 0.634318 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.729958 0.000000 0.270042 0.000000 MOTIF SWUUUG DREME-2 # Word Pos Neg P-value E-value # BEST SWUUUG 592 384 5.8e-014 2.4e-010 # CUUUUG 192 120 1.5e-005 6.2e-002 # GAUUUG 135 85 3.5e-004 1.4e+000 # GUUUUG 188 135 1.4e-003 5.5e+000 # CAUUUG 111 71 1.6e-003 6.3e+000 letter-probability matrix: alength= 4 w= 6 nsites= 645 E= 2.4e-010 0.000000 0.482171 0.517829 0.000000 0.392248 0.000000 0.000000 0.607752 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF UAURUA DREME-3 # Word Pos Neg P-value E-value # BEST UAURUA 309 161 3.4e-013 1.4e-009 # UAUAUA 197 93 1.5e-010 6.0e-007 # UAUGUA 130 69 6.1e-006 2.4e-002 letter-probability matrix: alength= 4 w= 6 nsites= 338 E= 1.4e-009 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.612426 0.000000 0.387574 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF YUUSUU DREME-4 # Word Pos Neg P-value E-value # BEST YUUSUU 773 581 5.2e-010 2.1e-006 # CUUCUU 136 80 6.0e-005 2.4e-001 # UUUCUU 329 254 5.4e-004 2.2e+000 # CUUGUU 135 90 1.3e-003 5.2e+000 # UUUGUU 306 251 7.5e-003 3.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 919 E= 2.1e-006 0.000000 0.277476 0.000000 0.722524 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.515778 0.484222 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF UGUAAB DREME-5 # Word Pos Neg P-value E-value # BEST UGUAAB 256 156 1.6e-007 6.1e-004 # UGUAAC 65 28 6.8e-005 2.7e-001 # UGUAAU 143 95 8.7e-004 3.4e+000 # UGUAAG 57 34 9.7e-003 3.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 274 E= 6.1e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.248175 0.204380 0.547445 MOTIF CUCUGU DREME-6 # Word Pos Neg P-value E-value # BEST CUCUGU 66 21 5.7e-007 2.3e-003 # CUCUGU 66 21 5.7e-007 2.3e-003 letter-probability matrix: alength= 4 w= 6 nsites= 67 E= 2.3e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF UUUGGK DREME-7 # Word Pos Neg P-value E-value # BEST UUUGGK 174 102 4.9e-006 1.9e-002 # UUUGGG 52 24 8.1e-004 3.2e+000 # UUUGGU 125 80 8.2e-004 3.2e+000 letter-probability matrix: alength= 4 w= 6 nsites= 180 E= 1.9e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.288889 0.711111 MOTIF WACCAA DREME-8 # Word Pos Neg P-value E-value # BEST WACCAA 94 44 9.6e-006 3.8e-002 # AACCAA 57 29 1.5e-003 6.0e+000 # UACCAA 37 16 2.6e-003 1.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 96 E= 3.8e-002 0.604167 0.000000 0.000000 0.395833 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 14.71 seconds