# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2500 from ./fasta/posSeq.fa (Sat Jun 12 20:52:00 CST 2021)
#   negatives: 2500 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:59:08 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.313 C 0.138 G 0.156 U 0.393


MOTIF AUAUAK DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      AUAUAK        304        122   6.9e-021   2.8e-017
#           AUAUAU        251         99   9.7e-018   4.0e-014
#           AUAUAG         65         32   4.7e-004   1.9e+000

letter-probability matrix: alength= 4 w= 6 nsites= 331 E= 2.8e-017
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.169184 0.830816


MOTIF AAKAAA DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      AAKAAA        517        284   1.1e-019   4.7e-016
#           AAUAAA        335        172   1.0e-014   4.2e-011
#           AAGAAA        214        125   3.2e-007   1.3e-003

letter-probability matrix: alength= 4 w= 6 nsites= 562 E= 4.7e-016
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.380783 0.619217
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF BUUUGK DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      BUUUGK        876        648   1.4e-012   5.8e-009
#           CUUUGU        173        101   4.6e-006   1.9e-002
#           UUUUGG        171        118   7.9e-004   3.2e+000
#           UUUUGU        383        311   1.8e-003   7.4e+000
#           GUUUGU        161        117   3.9e-003   1.6e+001
#           CUUUGG         53         29   5.0e-003   2.0e+001
#           GUUUGG         80         51   6.4e-003   2.6e+001

letter-probability matrix: alength= 4 w= 6 nsites= 1032 E= 5.8e-009
0.000000 0.225775 0.216085 0.558140
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.286822 0.713178


MOTIF WUGUAA DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      WUGUAA        302        206   4.1e-006   1.6e-002
#           UUGUAA        155        104   6.9e-004   2.7e+000
#           AUGUAA        156        109   1.8e-003   7.2e+000

letter-probability matrix: alength= 4 w= 6 nsites= 321 E= 1.6e-002
0.495327 0.000000 0.000000 0.504673
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GUUACY DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      GUUACY         80         34   7.9e-006   3.1e-002
#           GUUACU         58         28   7.3e-004   2.9e+000
#           GUUACC         23          6   1.1e-003   4.5e+000

letter-probability matrix: alength= 4 w= 6 nsites= 83 E= 3.1e-002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.277108 0.000000 0.722892


# Stopping reason: E-value threshold exceeded
#    Running time: 10.77 seconds