# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 416 from ./fasta/posSeq.fa (Sat Jun 12 20:52:00 CST 2021)
#   negatives: 416 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:58:53 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.307 C 0.133 G 0.152 U 0.408


MOTIF WAUAWA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      WAUAWA        136         69   4.5e-008   1.4e-004
#           UAUAAA         36         12   2.5e-004   7.8e-001
#           AAUAAA         61         32   9.7e-004   3.0e+000
#           UAUAUA         41         19   2.3e-003   7.1e+000
#           AAUAUA         28         12   7.1e-003   2.2e+001

letter-probability matrix: alength= 4 w= 6 nsites= 161 E= 1.4e-004
0.590062 0.000000 0.000000 0.409938
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.608696 0.000000 0.000000 0.391304
1.000000 0.000000 0.000000 0.000000


MOTIF UUUUGS DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUUGS         66         27   1.2e-005   3.6e-002
#           UUUUGG         39         15   5.2e-004   1.6e+000
#           UUUUGC         31         14   6.7e-003   2.1e+001

letter-probability matrix: alength= 4 w= 6 nsites= 72 E= 3.6e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.430556 0.569444 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 1.26 seconds