# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2236 from ./fasta/posSeq.fa (Sat Jun 12 20:52:00 CST 2021)
#   negatives: 2236 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:58:45 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.311 C 0.138 G 0.156 U 0.395


MOTIF WAUAWA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      WAUAWA        681        404   2.0e-022   8.3e-019
#           AAUAAA        298        146   1.3e-014   5.2e-011
#           UAUAUA        204        103   1.2e-009   5.0e-006
#           UAUAAA        171        121   1.5e-003   6.0e+000
#           AAUAUA        146        104   3.8e-003   1.5e+001

letter-probability matrix: alength= 4 w= 6 nsites= 780 E= 8.3e-019
0.566667 0.000000 0.000000 0.433333
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.566667 0.000000 0.000000 0.433333
1.000000 0.000000 0.000000 0.000000


MOTIF BUUUGG DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      BUUUGG        284        157   1.0e-010   4.1e-007
#           UUUUGG        172         89   6.8e-008   2.7e-004
#           CUUUGG         50         27   5.5e-003   2.2e+001
#           GUUUGG         71         45   9.2e-003   3.6e+001

letter-probability matrix: alength= 4 w= 6 nsites= 293 E= 4.1e-007
0.000000 0.170648 0.228669 0.600683
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF UWUGUA DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      UWUGUA        337        206   1.1e-009   4.5e-006
#           UUUGUA        215        134   3.8e-006   1.5e-002
#           UAUGUA        130         76   7.2e-005   2.9e-001

letter-probability matrix: alength= 4 w= 6 nsites= 359 E= 4.5e-006
0.000000 0.000000 0.000000 1.000000
0.376045 0.000000 0.000000 0.623955
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACUUUG DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      ACUUUG         89         36   8.6e-007   3.4e-003
#           ACUUUG         89         36   8.6e-007   3.4e-003

letter-probability matrix: alength= 4 w= 6 nsites= 90 E= 3.4e-003
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF UGUWAC DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      UGUWAC        129         66   2.4e-006   9.3e-003
#           UGUAAC         62         25   3.9e-005   1.5e-001
#           UGUUAC         68         42   7.7e-003   3.0e+001

letter-probability matrix: alength= 4 w= 6 nsites= 135 E= 9.3e-003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.466667 0.000000 0.000000 0.533333
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CUWUUG DREME-6

#             Word        Pos        Neg    P-value    E-value
# BEST      CUWUUG        164         94   4.3e-006   1.7e-002
#           CUUUUG        122         72   1.5e-004   5.9e-001
#           CUAUUG         43         23   8.9e-003   3.5e+001

letter-probability matrix: alength= 4 w= 6 nsites= 165 E= 1.7e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.260606 0.000000 0.000000 0.739394
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 9.58 seconds