# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 646 from ./fasta/posSeq.fa (Sat Jun 12 20:51:59 CST 2021) # negatives: 646 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 19:58:42 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.299 C 0.141 G 0.156 U 0.404 MOTIF AAUAAR DREME-1 # Word Pos Neg P-value E-value # BEST AAUAAR 121 42 1.4e-011 5.0e-008 # AAUAAA 100 33 3.6e-010 1.3e-006 # AAUAAG 24 9 6.2e-003 2.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 128 E= 5.0e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.820312 0.000000 0.179688 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 1.06 seconds