# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2042 from ./fasta/posSeq.fa (Sat Jun 12 20:51:59 CST 2021)
#   negatives: 2042 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:58:31 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.311 C 0.138 G 0.155 U 0.396


MOTIF AAKAAA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      AAKAAA        426        220   4.2e-019   1.7e-015
#           AAUAAA        273        138   1.1e-012   4.3e-009
#           AAGAAA        174         95   3.7e-007   1.5e-003

letter-probability matrix: alength= 4 w= 6 nsites= 461 E= 1.7e-015
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.379610 0.620390
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF URUAUR DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      URUAUR        428        228   6.9e-018   2.8e-014
#           UAUAUG        142         57   2.9e-010   1.2e-006
#           UAUAUA        191         93   8.6e-010   3.5e-006
#           UGUAUA        122         71   1.1e-004   4.2e-001
#           UGUAUG         76         42   9.7e-004   3.9e+000

letter-probability matrix: alength= 4 w= 6 nsites= 491 E= 2.8e-014
0.000000 0.000000 0.000000 1.000000
0.592668 0.000000 0.407332 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.629328 0.000000 0.370672 0.000000


MOTIF RGCUUU DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      RGCUUU        113         40   7.5e-010   3.0e-006
#           GGCUUU         46         11   1.4e-006   5.6e-003
#           AGCUUU         70         29   1.9e-005   7.4e-002

letter-probability matrix: alength= 4 w= 6 nsites= 118 E= 3.0e-006
0.601695 0.000000 0.398305 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF WUGUAA DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      WUGUAA        298        186   3.4e-008   1.4e-004
#           UUGUAA        185        114   1.2e-005   4.8e-002
#           AUGUAA        123         74   2.2e-004   8.5e-001

letter-probability matrix: alength= 4 w= 6 nsites= 320 E= 1.4e-004
0.390625 0.000000 0.000000 0.609375
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF WUUUGG DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      WUUUGG        234        141   2.8e-007   1.1e-003
#           AUUUGG         91         45   3.8e-005   1.5e-001
#           UUUUGG        149         99   6.4e-004   2.5e+000

letter-probability matrix: alength= 4 w= 6 nsites= 244 E= 1.1e-003
0.377049 0.000000 0.000000 0.622951
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF UUCUUC DREME-6

#             Word        Pos        Neg    P-value    E-value
# BEST      UUCUUC        117         54   4.9e-007   1.9e-003
#           UUCUUC        117         54   4.9e-007   1.9e-003

letter-probability matrix: alength= 4 w= 6 nsites= 122 E= 1.9e-003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 8.63 seconds