# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2323 from ./fasta/posSeq.fa (Sat Jun 12 20:51:59 CST 2021)
#   negatives: 2323 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:58:10 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.311 C 0.139 G 0.156 U 0.394


MOTIF AURUAW DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      AURUAW        599        350   6.1e-020   2.5e-016
#           AUAUAU        231        109   2.9e-012   1.2e-008
#           AUGUAA        153         67   1.4e-009   5.7e-006
#           AUGUAU        148         96   3.8e-004   1.6e+000
#           AUAUAA        167        120   2.5e-003   1.0e+001

letter-probability matrix: alength= 4 w= 6 nsites= 692 E= 2.5e-016
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.554913 0.000000 0.445087 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.424855 0.000000 0.000000 0.575145


MOTIF AAKAAR DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      AAKAAR        572        346   4.2e-017   1.7e-013
#           AAUAAA        292        172   2.4e-009   9.8e-006
#           AAGAAA        191        107   2.9e-007   1.2e-003
#           AAGAAG         89         45   7.2e-005   2.9e-001
#           AAUAAG         84         49   1.3e-003   5.3e+000

letter-probability matrix: alength= 4 w= 6 nsites= 650 E= 1.7e-013
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.403077 0.596923
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.740000 0.000000 0.260000 0.000000


MOTIF UUUGGB DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUGGB        280        132   9.1e-015   3.7e-011
#           UUUGGU        175         80   4.6e-010   1.9e-006
#           UUUGGG         61         28   2.7e-004   1.1e+000
#           UUUGGC         47         25   6.0e-003   2.4e+001

letter-probability matrix: alength= 4 w= 6 nsites= 291 E= 3.7e-011
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.161512 0.213058 0.625430


MOTIF CUYUGU DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      CUYUGU        225        128   4.5e-008   1.8e-004
#           CUUUGU        167         99   1.1e-005   4.2e-002
#           CUCUGU         61         29   4.3e-004   1.7e+000

letter-probability matrix: alength= 4 w= 6 nsites= 236 E= 1.8e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.262712 0.000000 0.737288
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF UGUAAY DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      UGUAAY        185        105   7.2e-007   2.9e-003
#           UGUAAC         61         28   2.7e-004   1.1e+000
#           UGUAAU        126         78   3.6e-004   1.4e+000

letter-probability matrix: alength= 4 w= 6 nsites= 195 E= 2.9e-003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.323077 0.000000 0.676923


MOTIF YUUCUU DREME-6

#             Word        Pos        Neg    P-value    E-value
# BEST      YUUCUU        381        272   2.5e-006   9.8e-003
#           UUUCUU        284        207   1.4e-004   5.5e-001
#           CUUCUU        119         83   5.8e-003   2.3e+001

letter-probability matrix: alength= 4 w= 6 nsites= 416 E= 9.8e-003
0.000000 0.276442 0.000000 0.723558
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 10.41 seconds