# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2189 from ./fasta/posSeq.fa (Sat Jun 12 20:51:58 CST 2021)
#   negatives: 2189 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:57:51 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.311 C 0.138 G 0.156 U 0.395


MOTIF UAURUA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      UAURUA        306        136   5.0e-018   2.0e-014
#           UAUAUA        192         73   1.5e-014   5.9e-011
#           UAUGUA        128         67   4.7e-006   1.9e-002

letter-probability matrix: alength= 4 w= 6 nsites= 340 E= 2.0e-014
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.623529 0.000000 0.376471 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AABAAA DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      AABAAA        525        317   7.9e-016   3.2e-012
#           AAUAAA        268        160   2.2e-008   9.0e-005
#           AAGAAA        176         96   3.2e-007   1.3e-003
#           AACAAA        145         91   1.9e-004   7.4e-001

letter-probability matrix: alength= 4 w= 6 nsites= 596 E= 3.2e-012
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.243289 0.296980 0.459732
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF UUGGUU DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      UUGGUU        163         79   1.5e-008   6.0e-005
#           UUGGUU        163         79   1.5e-008   6.0e-005

letter-probability matrix: alength= 4 w= 6 nsites= 169 E= 6.0e-005
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF UUUSUU DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUSUU        593        446   1.0e-007   4.1e-004
#           UUUCUU        295        202   5.6e-006   2.2e-002
#           UUUGUU        343        274   1.6e-003   6.2e+000

letter-probability matrix: alength= 4 w= 6 nsites= 672 E= 4.1e-004
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.461310 0.538690 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF RGCUUU DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      RGCUUU        103         51   1.2e-005   4.8e-002
#           GGCUUU         49         18   8.7e-005   3.4e-001
#           AGCUUU         58         33   5.3e-003   2.1e+001

letter-probability matrix: alength= 4 w= 6 nsites= 108 E= 4.8e-002
0.537037 0.000000 0.462963 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 8.85 seconds