# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2377 from ./fasta/posSeq.fa (Sat Jun 12 20:51:58 CST 2021)
#   negatives: 2377 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:57:38 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.313 C 0.137 G 0.155 U 0.394


MOTIF AUAUAU DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      AUAUAU        232         85   2.9e-018   1.2e-014
#           AUAUAU        232         85   2.9e-018   1.2e-014

letter-probability matrix: alength= 4 w= 6 nsites= 249 E= 1.2e-014
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF SUUUKG DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      SUUUKG        463        260   1.2e-016   4.7e-013
#           CUUUUG        179         89   8.2e-009   3.4e-005
#           GUUUUG        180        115   5.6e-005   2.3e-001
#           GUUUGG         78         41   3.8e-004   1.6e+000
#           CUUUGG         51         25   1.8e-003   7.3e+000

letter-probability matrix: alength= 4 w= 6 nsites= 498 E= 4.7e-013
0.000000 0.469880 0.530120 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.259036 0.740964
0.000000 0.000000 1.000000 0.000000


MOTIF AABAAA DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      AABAAA        585        376   2.4e-014   9.8e-011
#           AAUAAA        310        186   2.3e-009   9.2e-006
#           AAGAAA        195        131   1.4e-004   5.8e-001
#           AACAAA        150        105   2.3e-003   9.1e+000

letter-probability matrix: alength= 4 w= 6 nsites= 664 E= 9.8e-011
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.227410 0.296687 0.475904
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF WUGUAW DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      WUGUAW        584        434   6.6e-008   2.6e-004
#           AUGUAU        136         95   3.4e-003   1.4e+001
#           AUGUAA        149        107   4.2e-003   1.7e+001
#           UUGUAU        173        128   4.3e-003   1.7e+001
#           UUGUAA        178        137   9.8e-003   3.9e+001

letter-probability matrix: alength= 4 w= 6 nsites= 659 E= 2.6e-004
0.438543 0.000000 0.000000 0.561457
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.506829 0.000000 0.000000 0.493171


MOTIF UUYGGU DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      UUYGGU        124         57   2.1e-007   8.5e-004
#           UUUGGU         97         45   5.7e-006   2.2e-002
#           UUCGGU         28         12   8.1e-003   3.2e+001

letter-probability matrix: alength= 4 w= 6 nsites= 129 E= 8.5e-004
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.217054 0.000000 0.782946
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF UUKCUU DREME-6

#             Word        Pos        Neg    P-value    E-value
# BEST      UUKCUU        387        266   2.0e-007   8.0e-004
#           UUUCUU        296        199   2.4e-006   9.6e-003
#           UUGCUU        107         73   6.0e-003   2.4e+001

letter-probability matrix: alength= 4 w= 6 nsites= 423 E= 8.0e-004
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.257683 0.742317
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 11.47 seconds