# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 1942 from ./fasta/posSeq.fa (Sat Jun 12 20:51:57 CST 2021)
#   negatives: 1942 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:57:22 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.301 C 0.140 G 0.158 U 0.402


MOTIF WAURAA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      WAURAA        546        345   9.4e-015   3.8e-011
#           AAUAAA        236        131   4.7e-009   1.9e-005
#           AAUGAA        128         80   3.9e-004   1.6e+000
#           UAUGAA        115         71   5.9e-004   2.4e+000
#           UAUAAA        131         94   6.6e-003   2.7e+001

letter-probability matrix: alength= 4 w= 6 nsites= 611 E= 3.8e-011
0.584288 0.000000 0.000000 0.415712
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.605565 0.000000 0.394435 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF UUUGBU DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      UUUGBU        553        394   1.7e-009   6.6e-006
#           UUUGGU        164        101   3.7e-005   1.5e-001
#           UUUGCU        112         66   2.6e-004   1.0e+000
#           UUUGUU        322        259   2.6e-003   1.0e+001

letter-probability matrix: alength= 4 w= 6 nsites= 632 E= 6.6e-006
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.180380 0.265823 0.553797
0.000000 0.000000 0.000000 1.000000


MOTIF SRGUUU DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      SRGUUU        217        121   2.7e-008   1.0e-004
#           CGGUUU         29          8   3.6e-004   1.4e+000
#           CAGUUU         77         47   3.9e-003   1.5e+001
#           GGGUUU         41         20   4.6e-003   1.8e+001
#           GAGUUU         77         48   5.3e-003   2.1e+001

letter-probability matrix: alength= 4 w= 6 nsites= 228 E= 1.0e-004
0.000000 0.473684 0.526316 0.000000
0.679825 0.000000 0.320175 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF UAURUA DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      UAURUA        179         98   2.6e-007   1.0e-003
#           UAUAUA         92         52   4.3e-004   1.7e+000
#           UAUGUA         90         51   5.2e-004   2.0e+000

letter-probability matrix: alength= 4 w= 6 nsites= 186 E= 1.0e-003
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.500000 0.000000 0.500000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGMAA DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      AAGMAA        165         91   1.0e-006   4.0e-003
#           AAGAAA        134         79   6.6e-005   2.6e-001
#           AAGCAA         33         13   2.2e-003   8.4e+000

letter-probability matrix: alength= 4 w= 6 nsites= 177 E= 4.0e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.813559 0.186441 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 7.82 seconds