# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2429 from ./fasta/posSeq.fa (Sat Jun 12 20:51:57 CST 2021)
#   negatives: 2429 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:57:12 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.312 C 0.137 G 0.155 U 0.395


MOTIF AAKAAA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      AAKAAA        471        271   7.5e-016   3.0e-012
#           AAUAAA        306        171   4.0e-011   1.6e-007
#           AAGAAA        196        111   3.2e-007   1.3e-003

letter-probability matrix: alength= 4 w= 6 nsites= 520 E= 3.0e-012
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.388462 0.611538
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF SUUUKG DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      SUUUKG        484        284   1.9e-015   7.5e-012
#           CUUUUG        185        108   2.1e-006   8.4e-003
#           GUUUUG        187        113   6.2e-006   2.5e-002
#           CUUUGG         57         28   1.0e-003   4.0e+000
#           GUUUGG         80         48   2.6e-003   1.1e+001

letter-probability matrix: alength= 4 w= 6 nsites= 519 E= 7.5e-012
0.000000 0.472062 0.527938 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.263969 0.736031
0.000000 0.000000 1.000000 0.000000


MOTIF UAURUA DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      UAURUA        341        176   7.4e-015   3.0e-011
#           UAUAUA        216        102   1.8e-011   7.1e-008
#           UAUGUA        141         79   1.1e-005   4.6e-002

letter-probability matrix: alength= 4 w= 6 nsites= 376 E= 3.0e-011
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.627660 0.000000 0.372340 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF UGUAAY DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      UGUAAY        238        139   6.4e-008   2.5e-004
#           UGUAAC         85         34   1.2e-006   4.9e-003
#           UGUAAU        157        107   9.4e-004   3.7e+000

letter-probability matrix: alength= 4 w= 6 nsites= 252 E= 2.5e-004
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.345238 0.000000 0.654762


MOTIF UUKCUU DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      UUKCUU        400        278   2.6e-007   1.0e-003
#           UUUCUU        303        215   2.5e-005   1.0e-001
#           UUGCUU        111         76   5.5e-003   2.2e+001

letter-probability matrix: alength= 4 w= 6 nsites= 435 E= 1.0e-003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.259770 0.740230
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 9.48 seconds