# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2460 from ./fasta/posSeq.fa (Sat Jun 12 20:51:57 CST 2021) # negatives: 2460 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 19:57:00 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.310 C 0.139 G 0.154 U 0.397 MOTIF WAUAWA DREME-1 # Word Pos Neg P-value E-value # BEST WAUAWA 718 426 3.0e-023 1.2e-019 # AAUAAA 320 161 1.0e-014 4.2e-011 # UAUAUA 197 96 6.0e-010 2.4e-006 # AAUAUA 149 92 1.0e-004 4.2e-001 # UAUAAA 181 134 3.6e-003 1.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 813 E= 1.2e-019 0.581796 0.000000 0.000000 0.418204 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.585486 0.000000 0.000000 0.414514 1.000000 0.000000 0.000000 0.000000 MOTIF UWUGUW DREME-2 # Word Pos Neg P-value E-value # BEST UWUGUW 808 618 1.4e-009 5.5e-006 # UUUGUA 246 165 1.8e-005 7.2e-002 # UAUGUU 174 122 1.1e-003 4.4e+000 # UAUGUA 112 77 5.7e-003 2.3e+001 # UUUGUU 392 329 6.2e-003 2.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 955 E= 5.5e-006 0.000000 0.000000 0.000000 1.000000 0.302618 0.000000 0.000000 0.697382 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.372775 0.000000 0.000000 0.627225 MOTIF UUUGGK DREME-3 # Word Pos Neg P-value E-value # BEST UUUGGK 269 160 2.1e-008 8.3e-005 # UUUGGU 200 126 1.3e-005 5.3e-002 # UUUGGG 69 36 7.4e-004 2.9e+000 letter-probability matrix: alength= 4 w= 6 nsites= 277 E= 8.3e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.252708 0.747292 MOTIF UUUCUY DREME-4 # Word Pos Neg P-value E-value # BEST UUUCUY 418 306 3.8e-006 1.5e-002 # UUUCUU 300 228 5.3e-004 2.1e+000 # UUUCUC 135 91 1.7e-003 6.6e+000 letter-probability matrix: alength= 4 w= 6 nsites= 465 E= 1.5e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.303226 0.000000 0.696774 MOTIF AAYAAG DREME-5 # Word Pos Neg P-value E-value # BEST AAYAAG 155 88 6.3e-006 2.5e-002 # AACAAG 65 33 7.2e-004 2.8e+000 # AAUAAG 93 55 9.6e-004 3.8e+000 letter-probability matrix: alength= 4 w= 6 nsites= 161 E= 2.5e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.403727 0.000000 0.596273 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GUUWCC DREME-6 # Word Pos Neg P-value E-value # BEST GUUWCC 64 24 1.0e-005 4.0e-002 # GUUUCC 45 18 4.2e-004 1.6e+000 # GUUACC 19 6 7.2e-003 2.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 65 E= 4.0e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.292308 0.000000 0.000000 0.707692 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCAAUG DREME-7 # Word Pos Neg P-value E-value # BEST GCAAUG 40 10 1.1e-005 4.3e-002 # GCAAUG 40 10 1.1e-005 4.3e-002 letter-probability matrix: alength= 4 w= 6 nsites= 40 E= 4.3e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 10.87 seconds