# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2247 from ./fasta/posSeq.fa (Sat Jun 12 20:51:56 CST 2021)
#   negatives: 2247 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:56:41 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.312 C 0.138 G 0.156 U 0.394


MOTIF WAUAWA DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      WAUAWA        672        396   1.8e-022   7.5e-019
#           AAUAAA        289        144   1.1e-013   4.3e-010
#           UAUAUA        195         96   1.0e-009   4.2e-006
#           AAUAUA        150        103   1.4e-003   5.8e+000
#           UAUAAA        161        119   5.6e-003   2.3e+001

letter-probability matrix: alength= 4 w= 6 nsites= 766 E= 7.5e-019
0.578329 0.000000 0.000000 0.421671
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.558747 0.000000 0.000000 0.441253
1.000000 0.000000 0.000000 0.000000


MOTIF DUUUGG DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      DUUUGG        334        179   1.8e-013   7.0e-010
#           UUUUGG        169         83   1.3e-008   5.4e-005
#           AUUUGG        104         57   1.0e-004   4.1e-001
#           GUUUGG         77         44   1.5e-003   6.1e+000

letter-probability matrix: alength= 4 w= 6 nsites= 353 E= 7.0e-010
0.303116 0.000000 0.203966 0.492918
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GUUUCW DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      GUUUCW        220        123   2.9e-008   1.1e-004
#           GUUUCU        140         72   1.0e-006   4.0e-003
#           GUUUCA         83         55   9.6e-003   3.8e+001

letter-probability matrix: alength= 4 w= 6 nsites= 231 E= 1.1e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.372294 0.000000 0.000000 0.627706


MOTIF HUGUAA DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      HUGUAA        349        233   1.5e-007   5.9e-004
#           AUGUAA        128         76   1.2e-004   4.8e-001
#           UUGUAA        173        124   1.9e-003   7.7e+000
#           CUGUAA         63         38   7.7e-003   3.0e+001

letter-probability matrix: alength= 4 w= 6 nsites= 378 E= 5.9e-004
0.343915 0.166667 0.000000 0.489418
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGCUUU DREME-5

#             Word        Pos        Neg    P-value    E-value
# BEST      GGCUUU         53         15   1.8e-006   6.9e-003
#           GGCUUU         53         15   1.8e-006   6.9e-003

letter-probability matrix: alength= 4 w= 6 nsites= 54 E= 6.9e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ASAAAA DREME-6

#             Word        Pos        Neg    P-value    E-value
# BEST      ASAAAA        258        170   4.6e-006   1.8e-002
#           AGAAAA        154        100   3.0e-004   1.2e+000
#           ACAAAA        117         77   2.0e-003   8.1e+000

letter-probability matrix: alength= 4 w= 6 nsites= 283 E= 1.8e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.431095 0.568905 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 9.59 seconds