# DREME 5.3.3
#     command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna
#   positives: 2410 from ./fasta/posSeq.fa (Sat Jun 12 20:51:56 CST 2021)
#   negatives: 2410 from shuffled positives
#        host: ubuntu-Super-Server
#        when: Sun Jun 13 19:56:32 CST 2021

MEME version 5.3.3

ALPHABET "RNA" RNA-LIKE
A "Adenine" CC0000
C "Cytosine" 0000CC
G "Guanine" FFB300
U "Uracil" 008000
N "Any base" = ACGU
X = ACGU
. = ACGU
V "Not U" = ACG
H "Not G" = ACU
D "Not C" = AGU
B "Not A" = CGU
M "Amino" = AC
R "Purine" = AG
W "Weak" = AU
S "Strong" = CG
Y "Pyrimidine" = CU
K "Keto" = GU
T = U
END ALPHABET

Background letter frequencies (from dataset):
A 0.313 C 0.138 G 0.156 U 0.394


MOTIF AURUAW DREME-1

#             Word        Pos        Neg    P-value    E-value
# BEST      AURUAW        601        373   1.5e-016   6.2e-013
#           AUAUAU        225        111   5.6e-011   2.3e-007
#           AUGUAU        142         90   2.9e-004   1.2e+000
#           AUAUAA        169        114   4.5e-004   1.9e+000
#           AUGUAA        162        113   1.4e-003   5.7e+000

letter-probability matrix: alength= 4 w= 6 nsites= 694 E= 6.2e-013
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.551873 0.000000 0.448127 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.448127 0.000000 0.000000 0.551873


MOTIF UUKSUU DREME-2

#             Word        Pos        Neg    P-value    E-value
# BEST      UUKSUU        868        608   2.5e-016   1.0e-012
#           UUGGUU        173         93   2.6e-007   1.1e-003
#           UUUCUU        324        235   3.7e-005   1.5e-001
#           UUUGUU        384        290   5.5e-005   2.2e-001
#           UUGCUU        122         70   8.0e-005   3.2e-001

letter-probability matrix: alength= 4 w= 6 nsites= 1030 E= 1.0e-012
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.282524 0.717476
0.000000 0.443689 0.556311 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAKAAA DREME-3

#             Word        Pos        Neg    P-value    E-value
# BEST      AAKAAA        460        282   6.6e-013   2.6e-009
#           AAUAAA        297        174   1.4e-009   5.4e-006
#           AAGAAA        191        122   3.3e-005   1.3e-001

letter-probability matrix: alength= 4 w= 6 nsites= 506 E= 2.6e-009
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.389328 0.610672
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF UGUAAY DREME-4

#             Word        Pos        Neg    P-value    E-value
# BEST      UGUAAY        186        108   1.6e-006   6.3e-003
#           UGUAAC         70         33   1.5e-004   5.8e-001
#           UGUAAU        119         78   1.8e-003   7.0e+000

letter-probability matrix: alength= 4 w= 6 nsites= 197 E= 6.3e-003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.365482 0.000000 0.634518


# Stopping reason: E-value threshold exceeded
#    Running time: 8.32 seconds