# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2197 from ./fasta/posSeq.fa (Sat Jun 12 20:51:56 CST 2021) # negatives: 2197 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 19:56:22 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.311 C 0.137 G 0.155 U 0.397 MOTIF AAKAAR DREME-1 # Word Pos Neg P-value E-value # BEST AAKAAR 601 333 2.1e-023 8.4e-020 # AAUAAA 337 163 5.5e-017 2.2e-013 # AAGAAA 184 103 4.5e-007 1.8e-003 # AAUAAG 96 55 4.3e-004 1.8e+000 # AAGAAG 73 40 1.1e-003 4.4e+000 letter-probability matrix: alength= 4 w= 6 nsites= 680 E= 8.4e-020 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.342647 0.657353 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.773529 0.000000 0.226471 0.000000 MOTIF YAUAYA DREME-2 # Word Pos Neg P-value E-value # BEST YAUAYA 320 155 4.5e-016 1.8e-012 # UAUAUA 190 80 2.0e-012 7.9e-009 # UAUACA 73 38 5.0e-004 2.0e+000 # CAUAUA 64 37 4.3e-003 1.7e+001 # CAUACA 34 16 7.4e-003 3.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 347 E= 1.8e-012 0.000000 0.276657 0.000000 0.723343 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.262248 0.000000 0.737752 1.000000 0.000000 0.000000 0.000000 MOTIF UUUGGK DREME-3 # Word Pos Neg P-value E-value # BEST UUUGGK 248 135 8.2e-010 3.3e-006 # UUUGGU 182 98 1.2e-007 4.9e-004 # UUUGGG 70 37 8.1e-004 3.2e+000 letter-probability matrix: alength= 4 w= 6 nsites= 255 E= 3.3e-006 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.274510 0.725490 MOTIF UGUWWC DREME-4 # Word Pos Neg P-value E-value # BEST UGUWWC 344 217 5.4e-009 2.1e-005 # UGUUUC 155 102 4.0e-004 1.6e+000 # UGUUAC 68 39 2.9e-003 1.2e+001 # UGUAAC 72 43 3.9e-003 1.6e+001 # UGUAUC 61 37 9.2e-003 3.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 360 E= 2.1e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.372222 0.000000 0.000000 0.627778 0.391667 0.000000 0.000000 0.608333 0.000000 1.000000 0.000000 0.000000 MOTIF AGYUUC DREME-5 # Word Pos Neg P-value E-value # BEST AGYUUC 118 58 2.3e-006 9.1e-003 # AGUUUC 86 46 2.6e-004 1.0e+000 # AGCUUC 33 13 2.2e-003 8.5e+000 letter-probability matrix: alength= 4 w= 6 nsites= 119 E= 9.1e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.277311 0.000000 0.722689 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGCYUU DREME-6 # Word Pos Neg P-value E-value # BEST GGCYUU 63 22 4.0e-006 1.6e-002 # GGCCUU 19 3 4.2e-004 1.6e+000 # GGCUUU 44 19 1.0e-003 4.0e+000 letter-probability matrix: alength= 4 w= 6 nsites= 64 E= 1.6e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.296875 0.000000 0.703125 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 # Stopping reason: E-value threshold exceeded # Running time: 10.37 seconds