# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2264 from ./fasta/posSeq.fa (Sat Jun 12 20:51:55 CST 2021) # negatives: 2264 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 19:56:10 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.312 C 0.137 G 0.155 U 0.397 MOTIF AAKAAR DREME-1 # Word Pos Neg P-value E-value # BEST AAKAAR 626 322 3.8e-029 1.5e-025 # AAUAAA 351 166 2.0e-018 8.0e-015 # AAGAAA 194 102 1.8e-008 7.3e-005 # AAGAAG 76 30 3.6e-006 1.5e-002 # AAUAAG 98 66 6.7e-003 2.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 708 E= 1.5e-025 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.344633 0.655367 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.775424 0.000000 0.224576 0.000000 MOTIF URUAUR DREME-2 # Word Pos Neg P-value E-value # BEST URUAUR 442 239 1.4e-017 5.8e-014 # UAUAUA 199 90 1.6e-011 6.3e-008 # UAUAUG 137 71 1.7e-006 6.7e-003 # UGUAUA 127 69 1.4e-005 5.6e-002 # UGUAUG 82 41 1.1e-004 4.6e-001 letter-probability matrix: alength= 4 w= 6 nsites= 501 E= 5.8e-014 0.000000 0.000000 0.000000 1.000000 0.580838 0.000000 0.419162 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.630739 0.000000 0.369261 0.000000 MOTIF UUUGGK DREME-3 # Word Pos Neg P-value E-value # BEST UUUGGK 255 117 3.3e-014 1.3e-010 # UUUGGU 190 89 2.1e-010 8.5e-007 # UUUGGG 69 28 1.6e-005 6.3e-002 letter-probability matrix: alength= 4 w= 6 nsites= 262 E= 1.3e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.263359 0.736641 MOTIF CUYUSU DREME-4 # Word Pos Neg P-value E-value # BEST CUYUSU 352 215 4.3e-010 1.7e-006 # CUCUCU 62 18 3.3e-007 1.3e-003 # CUUUGU 137 90 8.4e-004 3.3e+000 # CUCUGU 62 33 1.7e-003 6.9e+000 # CUUUCU 118 79 2.8e-003 1.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 382 E= 1.7e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.316754 0.000000 0.683246 0.000000 0.000000 0.000000 1.000000 0.000000 0.484293 0.515707 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CCUUYU DREME-5 # Word Pos Neg P-value E-value # BEST CCUUYU 147 73 1.8e-007 7.0e-004 # CCUUUU 111 57 1.3e-005 5.3e-002 # CCUUCU 40 16 8.6e-004 3.4e+000 letter-probability matrix: alength= 4 w= 6 nsites= 153 E= 7.0e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.261438 0.000000 0.738562 0.000000 0.000000 0.000000 1.000000 MOTIF UUCUUS DREME-6 # Word Pos Neg P-value E-value # BEST UUCUUS 238 157 1.2e-005 4.7e-002 # UUCUUC 122 75 3.8e-004 1.5e+000 # UUCUUG 128 86 2.0e-003 7.8e+000 letter-probability matrix: alength= 4 w= 6 nsites= 253 E= 4.7e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.498024 0.501976 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 10.35 seconds