# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2321 from ./fasta/posSeq.fa (Sat Jun 12 20:51:53 CST 2021) # negatives: 2321 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 19:55:29 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.311 C 0.137 G 0.154 U 0.398 MOTIF WAUAHA DREME-1 # Word Pos Neg P-value E-value # BEST WAUAHA 848 516 4.8e-027 2.0e-023 # AAUAAA 349 191 2.4e-013 9.7e-010 # UAUAUA 199 92 4.4e-011 1.8e-007 # AAUAUA 160 87 1.1e-006 4.4e-003 # UAUACA 77 47 4.0e-003 1.7e+001 # UAUAAA 183 139 6.4e-003 2.6e+001 # AAUACA 88 59 9.3e-003 3.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 988 E= 2.0e-023 0.609312 0.000000 0.000000 0.390688 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.512146 0.142713 0.000000 0.345142 1.000000 0.000000 0.000000 0.000000 MOTIF HUUUGG DREME-2 # Word Pos Neg P-value E-value # BEST HUUUGG 345 193 1.7e-012 6.6e-009 # AUUUGG 111 53 2.4e-006 9.5e-003 # UUUUGG 177 110 2.7e-005 1.1e-001 # CUUUGG 67 38 2.7e-003 1.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 366 E= 6.6e-009 0.311475 0.183060 0.000000 0.505464 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF SCUUUU DREME-3 # Word Pos Neg P-value E-value # BEST SCUUUU 208 109 4.6e-009 1.8e-005 # CCUUUU 118 65 4.0e-005 1.6e-001 # GCUUUU 94 48 5.5e-005 2.2e-001 letter-probability matrix: alength= 4 w= 6 nsites= 215 E= 1.8e-005 0.000000 0.558140 0.441860 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF UGUAAY DREME-4 # Word Pos Neg P-value E-value # BEST UGUAAY 227 129 3.7e-008 1.5e-004 # UGUAAC 77 33 1.3e-005 5.2e-002 # UGUAAU 154 98 1.7e-004 6.9e-001 letter-probability matrix: alength= 4 w= 6 nsites= 242 E= 1.5e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.322314 0.000000 0.677686 MOTIF YUUCUU DREME-5 # Word Pos Neg P-value E-value # BEST YUUCUU 419 296 3.3e-007 1.3e-003 # UUUCUU 317 230 4.4e-005 1.7e-001 # CUUCUU 134 85 4.3e-004 1.7e+000 letter-probability matrix: alength= 4 w= 6 nsites= 465 E= 1.3e-003 0.000000 0.270968 0.000000 0.729032 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AASAAM DREME-6 # Word Pos Neg P-value E-value # BEST AASAAM 368 260 2.1e-006 8.3e-003 # AACAAC 45 20 1.2e-003 4.8e+000 # AAGAAA 172 121 1.2e-003 4.9e+000 # AAGAAC 64 38 6.0e-003 2.3e+001 # AACAAA 135 97 6.3e-003 2.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 412 E= 8.3e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.417476 0.582524 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.742718 0.257282 0.000000 0.000000 MOTIF UWUAUG DREME-7 # Word Pos Neg P-value E-value # BEST UWUAUG 251 165 5.9e-006 2.3e-002 # UAUAUG 94 49 8.3e-005 3.3e-001 # UUUAUG 160 119 6.7e-003 2.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 261 E= 2.3e-002 0.000000 0.000000 0.000000 1.000000 0.367816 0.000000 0.000000 0.632184 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF UUCGWC DREME-8 # Word Pos Neg P-value E-value # BEST UUCGWC 49 15 1.1e-005 4.2e-002 # UUCGUC 31 9 3.2e-004 1.3e+000 # UUCGAC 19 6 7.2e-003 2.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 50 E= 4.2e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.380000 0.000000 0.000000 0.620000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 12.03 seconds