# DREME 5.3.3 # command: dreme -oc ./motif -p ./fasta/posSeq.fa -k 6 -rna # positives: 2228 from ./fasta/posSeq.fa (Sat Jun 12 20:51:52 CST 2021) # negatives: 2228 from shuffled positives # host: ubuntu-Super-Server # when: Sun Jun 13 19:55:09 CST 2021 MEME version 5.3.3 ALPHABET "RNA" RNA-LIKE A "Adenine" CC0000 C "Cytosine" 0000CC G "Guanine" FFB300 U "Uracil" 008000 N "Any base" = ACGU X = ACGU . = ACGU V "Not U" = ACG H "Not G" = ACU D "Not C" = AGU B "Not A" = CGU M "Amino" = AC R "Purine" = AG W "Weak" = AU S "Strong" = CG Y "Pyrimidine" = CU K "Keto" = GU T = U END ALPHABET Background letter frequencies (from dataset): A 0.311 C 0.137 G 0.155 U 0.397 MOTIF WAUAWA DREME-1 # Word Pos Neg P-value E-value # BEST WAUAWA 726 429 1.5e-024 6.0e-021 # UAUAUA 199 74 1.6e-015 6.8e-012 # AAUAAA 341 189 1.0e-012 4.2e-009 # AAUAUA 158 106 5.9e-004 2.4e+000 # UAUAAA 175 122 8.7e-004 3.6e+000 letter-probability matrix: alength= 4 w= 6 nsites= 822 E= 6.0e-021 0.615572 0.000000 0.000000 0.384428 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.587591 0.000000 0.000000 0.412409 1.000000 0.000000 0.000000 0.000000 MOTIF SUUUKG DREME-2 # Word Pos Neg P-value E-value # BEST SUUUKG 462 256 2.2e-017 8.8e-014 # CUUUUG 178 99 5.6e-007 2.2e-003 # GUUUUG 172 105 2.0e-005 7.9e-002 # GUUUGG 73 37 3.3e-004 1.3e+000 # CUUUGG 64 33 9.6e-004 3.9e+000 letter-probability matrix: alength= 4 w= 6 nsites= 499 E= 8.8e-014 0.000000 0.501002 0.498998 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272545 0.727455 0.000000 0.000000 1.000000 0.000000 MOTIF UUCKUC DREME-3 # Word Pos Neg P-value E-value # BEST UUCKUC 172 75 9.9e-011 3.9e-007 # UUCUUC 146 66 9.4e-009 3.7e-005 # UUCGUC 30 10 1.1e-003 4.2e+000 letter-probability matrix: alength= 4 w= 6 nsites= 181 E= 3.9e-007 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.160221 0.839779 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF UWUGUA DREME-4 # Word Pos Neg P-value E-value # BEST UWUGUA 301 194 2.0e-007 7.8e-004 # UAUGUA 109 62 1.5e-004 6.1e-001 # UUUGUA 197 134 1.9e-004 7.5e-001 letter-probability matrix: alength= 4 w= 6 nsites= 317 E= 7.8e-004 0.000000 0.000000 0.000000 1.000000 0.356467 0.000000 0.000000 0.643533 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF UGUUWC DREME-5 # Word Pos Neg P-value E-value # BEST UGUUWC 210 126 1.1e-006 4.4e-003 # UGUUUC 145 89 1.0e-004 4.1e-001 # UGUUAC 66 39 5.0e-003 1.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 214 E= 4.4e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.308411 0.000000 0.000000 0.691589 0.000000 1.000000 0.000000 0.000000 MOTIF AAUAAG DREME-6 # Word Pos Neg P-value E-value # BEST AAUAAG 90 39 3.1e-006 1.2e-002 # AAUAAG 90 39 3.1e-006 1.2e-002 letter-probability matrix: alength= 4 w= 6 nsites= 93 E= 1.2e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AASAAA DREME-7 # Word Pos Neg P-value E-value # BEST AASAAA 279 191 1.1e-005 4.1e-002 # AACAAA 132 82 2.8e-004 1.1e+000 # AAGAAA 166 115 1.0e-003 3.9e+000 letter-probability matrix: alength= 4 w= 6 nsites= 304 E= 4.1e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.444079 0.555921 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 10.58 seconds