Welcome
PlantAPAdb provides a comprehensive and manually curated catalog of APA sites in plants based on a large volume of data from diverse biological samples generated by 3′ seq. Currently, PlantAPAdb contains APA sites in seven plant organisms, including Oryza sativa L. (japonica and indica), Arabidopsis thaliana, Chlamydomonas reinhardtii, Medicago truncatula, Trifolium pratense, Populus trichocarpa and Phyllostachys edulis.

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e.g., BAH1, AT1G01050, GO:0005524 or root

Statistics

  • Sample # 37
  • Experiment # 86
  • Total tag # 308,380,174
  • Total cleavage site # 6,537,685
  • High confidence PAC # 91,946
  • Sample # 14
  • Experiment # 42
  • Total tag # 112,508,754
  • Total cleavage site # 4,150,983
  • High confidence PAC # 64,219
  • Sample # 14
  • Experiment # 42
  • Total tag # 135,802,234
  • Total cleavage site # 4,303,126
  • High confidence PAC # 63,544
  • Sample # 4
  • Experiment # 12
  • Total tag # 3,688,190
  • Total cleavage site # 207,867
  • High confidence PAC # 34,995
  • Sample # 3
  • Experiment # 9
  • Total tag # 4,281,782
  • Total cleavage site # 495,690
  • High confidence PAC # 49,832
  • Sample # 2
  • Experiment # 4
  • Total tag # 6,950,530
  • Total cleavage site # 394,208
  • High confidence PAC # 37,645
  • Sample # 3
  • Experiment # 9
  • Total tag # 50,801,147
  • Total cleavage site # 2,715,515
  • High confidence PAC # 44,066